Sorry for the delay...it took me longer than expected to get to this since I came down with the flu last week F2805 4160142 C->T: CAGI16:- ; PGP119:- L669 6753291 G->C: CAGI16:- ; PGP119:- PF5425 16638155 G->C: CAGI16:- ; PGP119:- PF6211 21296172 C->T: CAGI16:- ; PGP119:- The "-" results correspond to results matching the reference sequence at these positions, which I'm assuming (though haven't confirmed) corresponds to ancestral. Greg On Sat, Dec 22, 2012 at 3:07 PM, Bernie Cullen <[email protected]>wrote: > .... > > There are four SNPs which give no-calls at Geno 2.0 only for > I-L161 "Isles", There are now two I-L161 samples on the 1000 Genomes > volunteers' spreadsheet: CAGI16 and PGP119. They could be investigated > for the following: > F2805 (no call for all three I-L161 at Geno 2.0) > L669 (no call only for I-L161 "Isles-B2" at Geno 2.0) > PF5425 (no call only for I-L161 "Isles-D3" at Geno 2.0) > PF6211 (no call only for I-L161 "Isles-D2" and "Isles-D3" at Geno 2.0) >

Any clues as to which Isles clade 1000 Genomes volunteers CAGI16 and PGP119 belong to? ----- Original Message ----- From: "G. Magoon" <[email protected]> To: "Bernie Cullen" <[email protected]> Cc: [email protected] Sent: Saturday, December 29, 2012 4:47:30 PM Subject: Re: [yDNAhgI] No call at PF6211 is shared by Isles-D2 and Isles-D3 but not Isles-B2; revised list of Geno 2.0 SNPs in I-L161 "Isles" Sorry for the delay...it took me longer than expected to get to this since I came down with the flu last week F2805 4160142 C->T: CAGI16:- ; PGP119:- L669 6753291 G->C: CAGI16:- ; PGP119:- PF5425 16638155 G->C: CAGI16:- ; PGP119:- PF6211 21296172 C->T: CAGI16:- ; PGP119:- The "-" results correspond to results matching the reference sequence at these positions, which I'm assuming (though haven't confirmed) corresponds to ancestral. Greg On Sat, Dec 22, 2012 at 3:07 PM, Bernie Cullen <[email protected]>wrote: > .... > > There are four SNPs which give no-calls at Geno 2.0 only for > I-L161 "Isles", There are now two I-L161 samples on the 1000 Genomes > volunteers' spreadsheet: CAGI16 and PGP119. They could be investigated > for the following: > F2805 (no call for all three I-L161 at Geno 2.0) > L669 (no call only for I-L161 "Isles-B2" at Geno 2.0) > PF5425 (no call only for I-L161 "Isles-D3" at Geno 2.0) > PF6211 (no call only for I-L161 "Isles-D2" and "Isles-D3" at Geno 2.0) > ------------------------------- To unsubscribe from the list, please send an email to [email protected] with the word 'unsubscribe' without the quotes in the subject and the body of the message