Hi all, Today I received a I-L38 (I2a2b) Geno2.0 raw data file. It has a curious PF3514 = A,A According the chromosome browser A=ancestral and G=derived. All other I-L38 Geno2.0 samples have a PF3514=A,G. Also M23 and L161 samples have PF3514=A,G. How to interprete this curious PF3514 = A,A? Is it a miscall - or do all the other samples have a PF3514 miscall? Best, Hans
PF3514 is a trouble prone snp as measured on the chip. Right now with other things to do, I ignore PF3514. Kenneth Nordtvedt Haplogroup I Clade Modalities and Trees at: http://knordtvedt.home.bresnan.net -----Original Message----- From: Hans De Beule Sent: Wednesday, January 08, 2014 12:03 PM To: [email protected] Subject: [yDNAhgI] I2a2b and PF3514 Hi all, Today I received a I-L38 (I2a2b) Geno2.0 raw data file. It has a curious PF3514 = A,A According the chromosome browser A=ancestral and G=derived. All other I-L38 Geno2.0 samples have a PF3514=A,G. Also M23 and L161 samples have PF3514=A,G. How to interprete this curious PF3514 = A,A? Is it a miscall - or do all the other samples have a PF3514 miscall? Best, Hans ------------------------------- To unsubscribe from the list, please send an email to [email protected] with the word 'unsubscribe' without the quotes in the subject and the body of the message
I think Geno 2.0 has recalibrated/fixed PF3514 recently. I have multiple PF3514=A,A in I-P37.2 since November, before that they were almost all A G. Bernie